Welcome to pymzML’s documentation!

Contents

• 1. Introduction
  • 1.1. General information
  • 1.2. Summary
  • 1.3. Implementation
  • 1.4. Download
  • 1.5. Citation
  • 1.6. Installation
  • 1.7. Contributing
  • 1.8. Code of Conduct
• 2. Quick Start
  • 2.1. Parsing a mzML file and setting measured precision
  • 2.2. Seeking in a mzML file
  • 2.3. Reading mzML indices with a custom regular expression
• 3. pymzML module content
  • 3.1. Main reader interface
  • 3.2. Spectrum and Chromatogram
  • 3.3. Utils
  • 3.4. Plotting functions
  • 3.5. File Access
  • 3.6. OBO parser
  • 3.7. Regex patterns
• 4. Examples and Advanced Usage
  • 4.1. Writing and Reading igzip files
  • 4.2. Generalized Seekable index Gzip Writer
  • 4.3. Generalized Seekable index Gzip Reader
  • 4.4. Practical Example: Moby Dick
  • 4.5. igzip file format specification
  • 4.6. Implementing an own file class
  • 4.7. Example Scripts
• 5. Supplemental Material
  • 5.1. Benchmark Files

Indices and tables

• Index

• Module Index

• Search Page