5. Supplemental Material
5.1. Benchmark Files
All samples contain TMT labeled E.Coli cells on human background. The different Instruments (Orbitrap, Lumos, HF, HF-X) were run in DDA mode.
Machines:
- HF :
P0109699E18
P0109699E19
P0109699E22
- HF-X :
P0174319B7
P0174319B8
P0174319B9
- Lumos:
P0109699K8
P0109699K9
P0109699K10
- OrbiElite:
P81464G09
P81464G10
- Raw Files are accesible via PRIDE:
<tba>
- All benchmark files (igz) used in the paper can be found here:
https://drive.google.com/drive/folders/1GbN0cAqiyAEljcuooYKkqW4rcKlOlc5n